Título: | HEURISTICS FOR THE PROBLEM OF DNA SEQUENCING BY HYBRIDIZATION | ||||||||||||||||||||||||||||||||||||
Autor: |
ERALDO LUIS REZENDE FERNANDES |
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Colaborador(es): |
CELSO DA CRUZ CARNEIRO RIBEIRO - Orientador |
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Catalogação: | 04/MAI/2005 | Língua(s): | PORTUGUESE - BRAZIL |
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Tipo: | TEXT | Subtipo: | THESIS | ||||||||||||||||||||||||||||||||||
Notas: |
[pt] Todos os dados constantes dos documentos são de inteira responsabilidade de seus autores. Os dados utilizados nas descrições dos documentos estão em conformidade com os sistemas da administração da PUC-Rio. [en] All data contained in the documents are the sole responsibility of the authors. The data used in the descriptions of the documents are in conformity with the systems of the administration of PUC-Rio. |
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Referência(s): |
[pt] https://www.maxwell.vrac.puc-rio.br/projetosEspeciais/ETDs/consultas/conteudo.php?strSecao=resultado&nrSeq=6412&idi=1 [en] https://www.maxwell.vrac.puc-rio.br/projetosEspeciais/ETDs/consultas/conteudo.php?strSecao=resultado&nrSeq=6412&idi=2 |
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DOI: | https://doi.org/10.17771/PUCRio.acad.6412 | ||||||||||||||||||||||||||||||||||||
Resumo: | |||||||||||||||||||||||||||||||||||||
Sequencing by hybridization is an attractive alternative
for DNA sequencing.
This novel method can be less time and cost consuming than
the techniques
applied nowadays. A very important step of this method is
to solve
a combinatorial problem formulated as a special case of the
prize-collecting
traveling salesman problem. In this work, we propose a new
multistart construtive
heuristic to solve this problem. A learning strategy based
on adaptive
memory and a vocabulary building procedure are used to
improve the
performance of the multistart heuristic. The adaptive
memory is used to
intensify the construction of new solutions with the
elements that appear
frequently in the best solutions previously found by the
multistart heuristic.
The objective of the vocabulary building procedure is to
construct new
solutions combining parts of good solutions. Computational
experiments
have shown that these two methods significantly improves
the performance
of the multistart heuristic and are particularly suitable
for scheduling problems
whose best solutions are in most cases built by blocks of
elements that
appear together very often. The proposed heuristic obtains
systematically
better solutions and is less time consuming than the best
algorithms found
in the literature.
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