Fluid flow over flexible wall are present in several biological and industrial processes. The flexibility of the solid body permits the waves propagation along the interface, leading the system to become unstable even at low value of Reynolds number. This loss of stability induce some changes on the hydrodynamic characteristics and on the heat transfer of the process. Works available on literature are concentrated around linear stability analysis and experiments of determining critical parameters. Nevertheless these methodologies are not able of describing the system behavior after the desestabilization. In this work, the unstable regime of a Newtonian fluid Couette flow over an incompressible and impermeable Mooney-Rivlin solid is numerically studied by solving the coupled fluid and solid momentum equation. The Reynolds number has been chosen small enough to avoid the presence of inertial mechanisms. Different liquid-flexible solid thickness ratio were used to determine the effect of this parameter on the problem. The system of differential equations were integrated by Galerki s/finite elements method on space, and by finite differences on time. The necessity of using variables changeables time steps demanded the development of a specific equation to approximates the second material derivative present on the unsteady solid term.