Polychlorinated biphenyls (PCBs) and Polybrominated Diphenyls Ethers (PBDEs) are two highly lipophilic classes of persistent organic pollutants (POPs) able to resist degradation and with the ability to bioaccumulate through the food chain. PCBs were primarily used as insulating fluids in capacitors and transformers, as well as in several electrical equipments. The high levels of these pollutants in the environment can occur due to several factors, among which the disposal of obsolete electronic equipment. Both pollutants are endocrine disrupters that can cause reproductive alterations. They are neurotoxic and have carcinogenic effects. Humans, by occupying the top of food chain, are subject to a high risk of contamination by these compounds. In this study, we determined the levels of PBDEs and PCBs in different fish species from the Ilha Grande Bay, located in the southern state of Rio de Janeiro, Brazil. PCBs were the predominant pollutants and PBDEs levels were below the limit of quantification. PCBs concentrations were found in the different tissues of fish at concentrations ranging from 2.29 to 27.60 ng g(-1) wet wt in muscles and from 3.41 to 34.22 ng g(-1) wet wt in livers. PCB-87 was the major congener detected, with a mean concentration of 34.22 ng g(-1) wet wt in croaker samples. Correlations were established between the concentration of PCBs and biometric variables of the fish individuals, such as length and fat content, and a statistical variation due seasonality was also observed.